The secretome is the totality of secreted organic molecules and inorganic elements by biological cells, tissues, organs, and organisms. The concept of secretome is useful as it can refer to all the diagnostic candidates naturally produced. However, the term is more often referred as the secreted proteins of a proteome in a given species.
The following secretome database or knowledgebase are available at: (1) FunSecKB: the fungal secretome knowledgebase at http://bioinformatics.ysu.edu/secretomes/fungi.php (2) FunSecKB2: the fungal secretome and subcellular knowledgebase at http://bioinformatics.ysu.edu/secretomes/fungi2/index.php (3) PlantSecKB: the plant secretome and subcellular knowledgebase at http://bioinformatics.ysu.edu/secretomes/plant/index.php (4) MetazSecKB: the animal and human protein subcellular location database - the whole subcellular proteomes such as secreteome can be searched or downloaded at http://bioinformatics.ysu.edu/secretomes/animal/index.php (5) ProtSecKB: the protist protein subcellular location database - the whole subcellular proteomies such as secretome can be searched or downloaded at http://bioinformatics.ysu.edu/secretomes/protist/index.php
Video Secretome
See also
- Secretomics
- List of omics topics in biology
Maps Secretome
Sources and notes
Further reading
- Secretome in Omics.org's alphabetically listed omes and omics
- Lum G, Meinken J, Orr J, Frazier S, Min XJ. (2014) PlantSecKB: the plant secretome and subcellular proteome knowledgebase. Computational Molecular Biology. 4(1): 1-17 (doi:10.5376/cmb.2014.04.0001)
- Lum G, Min XJ. (2011) FunSecKB: the Fungal Secretome KnowledgeBase. Database - the Journal of Biological Databases and Curation. Vol. 2011. doi: 10.1093/database/bar001.
- Meinken J, Asch DK, Neizer-Ashun KA, Chang GH, Cooper JR CR, Min XJ. (2014) FunSecKB2: a fungal protein subcellular location knowledgebase. Computational Molecular Biology. 4(7): 1-17.
- Meinken J, Walker G, Cooper CR, Min XJ (2015) MetazSecKB: the human and animal secretome and subcellular proteome knowledgebase. Database, bav077
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